rs33174228 SNP Detail

Summary

• ID
  rs33174228
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25234788 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCGG CCGCCGGGGA CCTGAAGTCG
  S
  CGCCGGAGCG GGGAGGGGCG AACGT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J
ss39503366	mCV25256838	ABI	CRAMUS_MOUSE	f	SNP	C	G
ss145372915	ENSMUSSNP3756736	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J
rs33174228					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25234788 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8751	CpG island 8751	1193 bp distal
Cpgi8752	CpG island 8752	within coordinates
Cramp1	cramped chromatin regulator 1	26 bp upstream
Ift140	intraflagellar transport 140	268 bp upstream
Rr339341	regulatory region 339341	within coordinates
Rr405099	regulatory region 405099	within coordinates
Tssr143119	transcription start site region 143119	254 bp upstream
Tssr143120	transcription start site region 143120	529 bp upstream
Tssr143121	transcription start site region 143121	692 bp upstream
Tssr143122	transcription start site region 143122	767 bp upstream
Tssr146804	transcription start site region 146804	1480 bp upstream
Tssr146805	transcription start site region 146805	111 bp upstream
Tssr146806	transcription start site region 146806	96 bp upstream
Tssr146807	transcription start site region 146807	61 bp upstream
Tssr146808	transcription start site region 146808	23 bp upstream
Tssr146809	transcription start site region 146809	within coordinates