rs33174508 SNP Detail

Summary

• ID
  rs33174508
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164909093 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAAGACAG AGAAGGGTAA
  GAGAGCTAGG TCTGATGAGC GGGCCTGTCA GCGCAGCTAA TTAGAGGCAA GAGCTTTGTA
  AGTTCAAGGC TAGCCTGGGC AGCTTAGAAA GATACTGGTT CAACATAGAA AAGGGCTGCT
  GAGATGGGTC AGTAAGTTAA GCTCTTGCCT GATGGCCCAG CTTCCATCCC CAGCATCCAT
  R
  GAAAGGTAGA AGGAGAGGAT CAGCTCCTAA AAGTTGTCCT CTGACCGCTG CATGTACAGC
  ACAACACAGC ACAGCACATG TGAGTGTGCA TACATCATGC ACACACATCA TACATACATC
  ATGTGCACAT ATCATGCACA CACATCATGT GCACACATCA TACACACATC ATGCACACAC
  ATCATGTGCA CACATCATGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45246221	mCV23187174	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
ss148234674	ENSMUSSNP1927433	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs33174508					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164909093 () rs orientation: forward

Symbol	Name	Function Class
Cd40	CD40 antigen	within coordinates
Rr52793	regulatory region 52793	1930 bp proximal
Tssr21713	transcription start site region 21713	1454 bp downstream
Tssr21714	transcription start site region 21714	489 bp downstream
Tssr21715	transcription start site region 21715	455 bp downstream
Tssr21716	transcription start site region 21716	405 bp downstream
Tssr21717	transcription start site region 21717	312 bp downstream
Tssr21718	transcription start site region 21718	265 bp downstream
Tssr21719	transcription start site region 21719	171 bp downstream
Tssr21720	transcription start site region 21720	13 bp upstream
Tssr21721	transcription start site region 21721	56 bp upstream
Tssr21722	transcription start site region 21722	926 bp upstream
Tssr27603	transcription start site region 27603	1789 bp upstream