rs33175041 SNP Detail

Summary

• ID
  rs33175041
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:38720458 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGTT TGTTGCAGGG AACTGTGGGG
  Y
  GGTGCCTAGA AGGAATGCCA GTACC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	LG/J	SM/J
ss45746627	mCV22716486	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss148266954	ENSMUSSNP3161448	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss321518864	CHEV_5_38954354	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	LG/J	SM/J
rs33175041					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:38720458 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15817	CpG island 15817	932 bp distal
Gm57313	predicted gene, 57313	974 bp downstream
Gm72219	predicted gene, 72219	262 bp upstream
Rr399063	regulatory region 399063	1136 bp downstream
Tssr46063	transcription start site region 46063	1190 bp downstream
Tssr50812	transcription start site region 50812	1974 bp upstream
Tssr50813	transcription start site region 50813	1944 bp upstream
Tssr50814	transcription start site region 50814	1493 bp upstream
Tssr50815	transcription start site region 50815	1475 bp upstream
Tssr50816	transcription start site region 50816	1435 bp upstream
Tssr50817	transcription start site region 50817	1383 bp upstream
Tssr50818	transcription start site region 50818	1323 bp upstream
Tssr50819	transcription start site region 50819	100 bp downstream
Tssr50820	transcription start site region 50820	129 bp downstream
Wdr1	WD repeat domain 1	193 bp upstream