rs33175253 SNP Detail

Summary

• ID
  rs33175253
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:26499457 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGACCTCTAG CCCAGATGGC ATTTACAATG TAGTCAGCTG
  TACTGGCTGC TCCTCAGGCC AGCTGGAGAA GGACAGGACT GGAGTCACCC CATGCTGCCT
  R
  TTAGGGAGGG ACTGTCTCTG GCTAGTCTTG GGTGCCTGCC TTGGGTTGTT GTCACCTGAT
  AGGGCAAAGG AGTCCCATTT TCTCTCCTCT ATGAAGCCA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45246245	mCV25096168	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A	G
ss146386121	ENSMUSSNP2052464	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33175253					SNP	A	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:26499457 () rs orientation: forward

Symbol	Name	Function Class
Gm20532	predicted gene 20532	within coordinates
Gm39772	predicted gene, 39772	238 bp upstream
Gm57466	predicted gene, 57466	146 bp upstream
Rr48585	regulatory region 48585	within coordinates
Rr372944	regulatory region 372944	814 bp upstream
Tssr16813	transcription start site region 16813	317 bp upstream
Tssr16814	transcription start site region 16814	356 bp upstream
Tssr16815	transcription start site region 16815	1243 bp upstream
Tssr23142	transcription start site region 23142	1620 bp upstream
Tssr23143	transcription start site region 23143	1444 bp upstream
Tssr23144	transcription start site region 23144	1372 bp upstream
Tssr23145	transcription start site region 23145	1282 bp upstream
Tssr23146	transcription start site region 23146	1252 bp upstream
Tssr23147	transcription start site region 23147	1184 bp upstream
Tssr23148	transcription start site region 23148	811 bp upstream
Tssr23149	transcription start site region 23149	770 bp upstream