rs33175686 SNP Detail

Summary

• ID
  rs33175686
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102282921 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGAGAGCA ATGAGGTTAA
  CTTCTGTGAC TTTTCTCAGG GATGCTTGGA ATTAAACCTT GCTGTGCAAG TTGGACAGCC
  AAGTCAGGTC CCCTGGTCGC ATGCCACTTG GCTTTCCCAT TTTAAAGAAA GTTCAATATG
  TAGAGATAGG GATATCTAGA TAGATATAAA CACTTATTGT CAACATTCTC ACCTTGTTTT
  W
  AAGTTGTCAT TTAGTCAGTC ACTTTATTCC CAATTATAAA TTTCTCCCAA ACAAAGGAAA
  ATAAACAATT GTTTTACTAG TTTAGTGTAA AGGAAAAAGG ACTAGTGGGA AGTGGGGCAG
  TGAAGAAAAA AACAAACCAA CACATTATAA AAACTGATGC ATCTTCCTCC AGACTTTCTT
  GGATTTAATT TACCAGCAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45246032	mCV23728586	ABI	CRAMUS_MOUSE	f	SNP	T	A	T	T
ss320437747	CHEV_2_102292733	CHEVERUD	SCREENING_POP	f	SNP					A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33175686					SNP	T	A	T	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102282921 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11976	CpG island 11976	296 bp distal
Fjx1	four jointed box 1	784 bp upstream
Rr561694	regulatory region 561694	1816 bp distal
Rr561695	regulatory region 561695	1232 bp distal
Rr561696	regulatory region 561696	within coordinates
Rr561697	regulatory region 561697	867 bp proximal
Rr561698	regulatory region 561698	994 bp proximal
Tssr25397	transcription start site region 25397	802 bp upstream
Tssr25398	transcription start site region 25398	761 bp upstream
Tssr25399	transcription start site region 25399	733 bp upstream