rs33175929 SNP Detail

Summary

• ID
  rs33175929
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:5745722 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTCCAGTTC ATGAACCGGT GGCCATCTTT ACCAGTGATT
  TCCAGTTACA GTTTCAAAGT ATATAAAGTT GATTTCGCAA GCCTTTTTTC CAGGTCATGA
  R
  GCACTCTCTG AGAAGTGTCC TCAGTTCCCT GAAGTAATTT ATTCCACTGA AGCACAGCAA
  TAATTCATTA AATAAATCTC TAGTGGCCTA GAGGTGTTA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45746990	mCV22895477	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss147785119	ENSMUSSNP2494850	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33175929					SNP	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:5745722 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15524	CpG island 15524	1016 bp distal
Gm40262	predicted gene, 40262	within coordinates
Gm43219	predicted gene 43219	1136 bp upstream
Rr607034	regulatory region 607034	1681 bp distal
Rr607035	regulatory region 607035	1165 bp distal
Rr607036	regulatory region 607036	942 bp distal
Steap2	six transmembrane epithelial antigen of prostate 2	1144 bp upstream
Tssr50064	transcription start site region 50064	1613 bp upstream
Tssr50065	transcription start site region 50065	1410 bp upstream
Tssr50066	transcription start site region 50066	1275 bp upstream
Tssr50067	transcription start site region 50067	1231 bp upstream
Tssr50068	transcription start site region 50068	1183 bp upstream
Tssr50069	transcription start site region 50069	1141 bp upstream