rs33176259 SNP Detail

Summary

• ID
  rs33176259
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:155553453 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCTGGCTG AGGCATCAGT
  CAGATATATG ACGGACAGAC CCATGTCCCA TGCCCAGAGA GAATACTGCT CTATTCCCTC
  TTAGGGCTCC CACTGAAAGA TCTTGATCCT TGATGACACA GAGGGAAAGG TGTGTGTGTG
  TGTGTGTGTG TGTGTGTGTG TGTGTGTGAG CGCGCGTGCA AGTGCTCTCA AACTTCTACT
  R
  GAAAAAAAAA GAGCAACAAA AAACGGAGAG CAAGGAGGGA CGCATACCAA GGTGGGCGTG
  ACCCTGGACC TTCAGCTGAC AAGGCCCAGG GGCGGGGCCT CATAAAGCTG AGCCGGTGTT
  GGACTGAGTT TCGCTCTGTC TAAGGAACAT GGCCCCGGGG CCGTCAGCCA CACAGGGGAT
  CCTGCTGCTG CTGCCTCTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46780705	NES10992590	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33176259					SNP	A	A	A	A	A	A	G	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46780705	NES10992590	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155553453 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15469	CpG island 15469	42 bp proximal
Gm69352	predicted gene, 69352	within coordinates
Rr606482	regulatory region 606482	within coordinates
Rr606483	regulatory region 606483	633 bp proximal
Tmem52	transmembrane protein 52	118 bp upstream
Tssr40643	transcription start site region 40643	127 bp upstream