rs33177132 SNP Detail

Summary

• ID
  rs33177132
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:74110953 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGCTTGGT GAGCATTTTG
  TTACATAGCA ATTATTGGTA ATGATATTCT TATGGGTTTC CCATTTCTTG TTTGGCTCCT
  ATCTTGGTGT GCACATTCTT CCATGCCTGT TCCCATCATA CATTTCACGA TCTACCATTT
  TGGATGTAGC TCTGCCAAAA TCTTTACACT GCTCTGGATT GTTTTTAAGA AGGCTTTTTA
  Y
  GTGACCTCAA ATGCCTTCCA GTCTTCTCTC AGCTCATCCT TGAAGAGACA TCTCACAGCC
  ATGTTTCCTG TAATGCCTTC AAATTGACCA CGAAAAAAGC AAAAGATGGT TCTGCTTGCT
  TGCTTGCTTT TTTTTTTATT CTTATTTTTA TTTAATTTAA TTTTTTTTTT TTTTTGAGAC
  AGGGTTTCTC TGTGTAGCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39503798	mCV25306125	ABI	CRAMUS_MOUSE	f	SNP	C	T	T					T		T
ss60279642	NES15784987	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C	T		C	T	T	T	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33177132					SNP	C	T	T	T	T	C	T	T	C	T	T	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60279642	NES15784987	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:74110953 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9490	CpG island 9490	718 bp proximal
Ehd3	EH-domain containing 3	883 bp upstream
Tssr145810	transcription start site region 145810	870 bp upstream
Tssr145811	transcription start site region 145811	896 bp upstream
Tssr145812	transcription start site region 145812	925 bp upstream
Tssr145813	transcription start site region 145813	944 bp upstream
Tssr145814	transcription start site region 145814	987 bp upstream