rs33177147 SNP Detail

Summary

• ID
  rs33177147
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:155553683 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAAGGAGGG ACGCATACCA
  AGGTGGGCGT GACCCTGGAC CTTCAGCTGA CAAGGCCCAG GGGCGGGGCC TCATAAAGCT
  GAGCCGGTGT TGGACTGAGT TTCGCTCTGT CTAAGGAACA TGGCCCCGGG GCCGTCAGCC
  ACACAGGGGA TCCTGCTGCT GCTGCCTCTC CTGCCTCTGT CCCAGGTGGG TTGGGCCTCA
  Y
  TCGCAGCGGG TTTAAGGCAA GAGGGGCGGC CCTGAGTTCG GTCCCGCCCT GCTCAGGCTC
  ACCCTTGTCC CTACAGGTGA CGCTGGGTTC CGCGGACCGC AACTGTGACC CCTCGGATCA
  GTAAGTAGCT GGGGGCCAAG GGGAGAGGCA GAACTTGGAC CGTGCTGGGA AAGGCTGGAG
  CGGTGGAGTG AGCTAGCAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46780714	NES10992594	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33177147					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46780714	NES10992594	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155553683 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15469	CpG island 15469	within coordinates
Gm55744	predicted gene, 55744	1899 bp downstream
Gm69352	predicted gene, 69352	within coordinates
Rr606482	regulatory region 606482	85 bp distal
Rr606483	regulatory region 606483	403 bp proximal
Tmem52	transmembrane protein 52	Intron
Tssr40643	transcription start site region 40643	84 bp downstream