rs33178199 SNP Detail

Summary

• ID
  rs33178199
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:143927926 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAAC CATCTGTACA GCTACTGTGT
  R
  CTCATATACA TAAAGTAAAT AAATC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45746476	mCV25192122	ABI	CRAMUS_MOUSE	f	SNP	A	G	A	G
ss144605817	ENSMUSSNP625214	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		G
ss321708905	CHEV_5_144751977	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33178199					SNP	A	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:143927926 () rs orientation: forward

Symbol	Name	Function Class
Ccz1	CCZ1 vacuolar protein trafficking and biogenesis associated	within coordinates
Rr624320	regulatory region 624320	1731 bp distal
Tssr54387	transcription start site region 54387	1499 bp downstream
Tssr54388	transcription start site region 54388	1523 bp downstream
Tssr54389	transcription start site region 54389	1602 bp downstream