rs33178582 SNP Detail

Summary

• ID
  rs33178582
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:26755671 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGCT AGACATTGGT GACACTATGT
  R
  GAGTAGGAAG GCCAAGCTCC TTCCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39503892	mCV22900489	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss145405423	ENSMUSSNP230299	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		G
ss325342279	CHEV_17_26673642	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33178582					SNP	G	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26755671 () rs orientation: forward

Symbol	Name	Function Class
Gm34606	predicted gene, 34606	333 bp downstream
Gm50275	predicted gene, 50275	within coordinates
Gm64855	predicted gene, 64855	938 bp downstream
Rr405114	regulatory region 405114	1353 bp upstream
Rr523871	regulatory region 523871	1653 bp distal
Rr523872	regulatory region 523872	1354 bp distal
Rr523873	regulatory region 523873	571 bp distal
Rr523874	regulatory region 523874	1095 bp proximal
Rr523875	regulatory region 523875	1533 bp proximal
Tssr5048	transcription start site region 5048	1340 bp downstream
Tssr5049	transcription start site region 5049	1289 bp upstream
Tssr5050	transcription start site region 5050	861 bp downstream
Tssr143246	transcription start site region 143246	1633 bp upstream