rs33179013 SNP Detail

Summary

• ID
  rs33179013
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:26726770 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGAG ACAAGCCACT CACCCACCAG
  S
  GGCTGCGAGT TTACAAGGAA GGCTT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39504175	mCV23814922	ABI	CRAMUS_MOUSE	f	SNP	C	C	G	G	G
ss145404934	ENSMUSSNP3383811	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G		G
ss325342193	CHEV_17_26644741	CHEVERUD	SCREENING_POP	f	SNP						G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33179013					SNP	C	C	G	G	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26726770 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8810	CpG island 8810	446 bp distal
Cpgi8811	CpG island 8811	within coordinates
Dusp1	dual specificity phosphatase 1	within coordinates
Gm56886	predicted gene, 56886	740 bp upstream
Rr339410	regulatory region 339410	within coordinates
Rr405112	regulatory region 405112	636 bp upstream
Rr405113	regulatory region 405113	1008 bp upstream
Rr406958	regulatory region 406958	1056 bp proximal
Tssr5044	transcription start site region 5044	1155 bp upstream
Tssr5045	transcription start site region 5045	1667 bp downstream
Tssr5046	transcription start site region 5046	1720 bp downstream
Tssr5047	transcription start site region 5047	1729 bp downstream
Tssr143230	transcription start site region 143230	1425 bp downstream
Tssr143231	transcription start site region 143231	295 bp downstream
Tssr143232	transcription start site region 143232	852 bp upstream
Tssr143233	transcription start site region 143233	901 bp upstream
Tssr143234	transcription start site region 143234	953 bp upstream
Tssr143235	transcription start site region 143235	1905 bp upstream
Tssr143236	transcription start site region 143236	1930 bp upstream
Tssr146939	transcription start site region 146939	1829 bp upstream
Tssr146940	transcription start site region 146940	1799 bp upstream
Tssr146941	transcription start site region 146941	1630 bp upstream
Tssr146942	transcription start site region 146942	1608 bp upstream
Tssr146943	transcription start site region 146943	1526 bp upstream
Tssr146944	transcription start site region 146944	1401 bp upstream
Tssr146945	transcription start site region 146945	1338 bp upstream
Tssr146946	transcription start site region 146946	1280 bp upstream
Tssr146947	transcription start site region 146947	1259 bp upstream
Tssr146948	transcription start site region 146948	1233 bp upstream
Tssr146949	transcription start site region 146949	1165 bp upstream
Tssr146950	transcription start site region 146950	624 bp upstream
Tssr146951	transcription start site region 146951	137 bp upstream
Tssr146952	transcription start site region 146952	393 bp downstream
Tssr146953	transcription start site region 146953	418 bp downstream
Tssr146954	transcription start site region 146954	667 bp downstream
Tssr146955	transcription start site region 146955	1068 bp downstream
Tssr146956	transcription start site region 146956	1698 bp downstream
Tssr146957	transcription start site region 146957	1763 bp downstream