rs33179534 SNP Detail

Summary

• ID
  rs33179534
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:115077872 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AATAAGCAAG CACATCAAAC AATTAAAGGA AAGAAATCAT AAAGAAATAA CTTTAAAACA
  AGTATTTAAA GCAAGCAAGA TGGCTCAAGA GGTGAAAATA TTTGCTACCA AGCCTGGCAA
  ACTGAGTTTG ATCCCCAAAC GTGCAGATCT GGGGCTGGAG AGTTGGCTCA GCGGTTAAGA
  GCACTGTCTG TGCTTCCAGA GGTCCTGAGT TCAATTCCCA GTAACCACAT GGTGGCTCAC
  AACCATCTGT AATGGGATCT GATGTCCTCT TCTGAATAAA TAAATAAATC TTTAAAAAAA
  W
  AAATATATAT ATATATATAT TAGCCAGGCA GTGGTGGTGA ACACTTTAAT CCCAGCACTT
  GAGAGGCAGA GGCAGGCAGA TTTCTGAGTT CAAGGACAGC CTGGTCTACA GAGTGAGTTC
  CAGGACAACC AGGTCTACAC AGAGAAACCC TGTCTCAAAA CAAACAAACA AAAAAGATGT
  GCAGGCTGGG CGTGGTGGCA CACACCTTTA ATCCCAGCAC TCGGGAGGCA GAGGCAGGCG
  GATTTCTGAG TTCGAGGCCA GCCTGATCTA CAAAGTGAGT TCCAGGACAG CCAGAGCTAT
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45747112	mCV25153138	ABI	CRAMUS_MOUSE	f	SNP	T	A	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33179534					SNP	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115077872 () rs orientation: forward

Symbol	Name	Function Class
Oasl1	2'-5' oligoadenylate synthetase-like 1	1898 bp downstream
Rr618069	regulatory region 618069	1528 bp proximal
Rr618070	regulatory region 618070	1892 bp proximal
Tssr48190	transcription start site region 48190	1934 bp downstream
Tssr48191	transcription start site region 48191	1887 bp downstream