rs33179909 SNP Detail

Summary

• ID
  rs33179909
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:123129707 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCTGCTGG GTCTAAGTGG
  TCACTCAATA AACGTTGAGC CCTTGATGGA TCACCTTCTC CAGCATATTT GCATTTTCCC
  TTTATCAGTA ATTGGCAGAT GAAAGCCTTT GTCCTCAGTT GAAAGAATTC CAAGCATTCC
  CTCTGAGTGG GGGAGGAGGT TATTTTGGGC CACAGGGGGA AGGGCCAGAC CCTTGAGCTC
  Y
  AACTTCAGGC TGATTGTCCC CCAGGAGCTG AGAATAGGTG AGAAATAGGA AAGGGGGCTT
  CTTTTGAGAA AGATGAGCTT TTAACACAAG CCAGCCTCAT TGGAAATGAA ATAATGTCTT
  CCTGTACCGC CCTTGTAAAA GGCTCAGTCA GATCCTACCT GTGTTAGTCT GTTGTATCAT
  CTCAGGCCAA TTGAGCAACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45747203	mCV24884189	ABI	CRAMUS_MOUSE	f	SNP	C	C					T
ss51195103	NES13813332	PERLEGEN	MM_PANEL2	f	SNP		C	T	C	T	T		T	T	T	T		T	T	C		C
ss149192257	ENSMUSSNP5864845	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C							T
ss321670146	CHEV_5_123441653	CHEVERUD	SCREENING_POP	f	SNP												C				T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs33179909					SNP	C	C	T	C	T	T	T	T	T	T	T	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51195103	NES13813332	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123129707 () rs orientation: forward

Symbol	Name	Function Class
A930024E05Rik	RIKEN cDNA A930024E05 gene	within coordinates
Gm44574	predicted gene 44574	within coordinates
Gm73435	predicted gene, 73435	169 bp downstream
Rr620034	regulatory region 620034	1848 bp distal
Rr620035	regulatory region 620035	1703 bp distal
Rr620036	regulatory region 620036	828 bp distal
Rr620037	regulatory region 620037	within coordinates
Tssr48735	transcription start site region 48735	1905 bp downstream
Tssr48736	transcription start site region 48736	1882 bp downstream
Tssr48737	transcription start site region 48737	1701 bp downstream
Tssr48738	transcription start site region 48738	875 bp downstream
Tssr48739	transcription start site region 48739	864 bp downstream
Tssr48740	transcription start site region 48740	819 bp downstream
Tssr48741	transcription start site region 48741	780 bp downstream
Tssr53175	transcription start site region 53175	1354 bp upstream
Tssr53176	transcription start site region 53176	1237 bp upstream
Tssr53177	transcription start site region 53177	1181 bp upstream
Tssr53178	transcription start site region 53178	1149 bp upstream
Tssr53179	transcription start site region 53179	1115 bp upstream
Tssr53180	transcription start site region 53180	1071 bp upstream