rs33179980 SNP Detail

Summary

• ID
  rs33179980
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:6261379 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCCC TGCAGCTTCC CAGGGTTCTC
  Y
  AAGTCCAGAG CTGCTTGGCA GCGAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J	LG/J	SM/J
ss45247397	mCV25284802	ABI	CRAMUS_MOUSE	f	SNP	C	T
ss146277209	ENSMUSSNP6202465	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss320210433	CHEV_2_6177614	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J	LG/J	SM/J
rs33179980					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:6261379 () rs orientation: forward

Symbol	Name	Function Class
A230108P19Rik	RIKEN cDNA A230108P19 gene	within coordinates
Gm13383	predicted gene 13383	within coordinates
Gm46730	predicted gene, 46730	270 bp upstream
Rr551353	regulatory region 551353	246 bp distal
Rr551354	regulatory region 551354	within coordinates
Tssr22443	transcription start site region 22443	280 bp upstream