rs33180377 SNP Detail

Summary

• ID
  rs33180377
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24011573 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGTG TGCACATACA TGTGCAAGCA
  Y
  ATGGGGAGAC TCGCCCGAGG TCAAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39504443	mCV25239279	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C	T
ss145332922	ENSMUSSNP1765221	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		T
ss325327395	CHEV_17_23929566	CHEVERUD	SCREENING_POP	f	SNP						C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33180377					SNP	T	T	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24011573 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8694	CpG island 8694	1785 bp distal
D930048G16Rik	RIKEN cDNA D930048G16 gene	within coordinates
Gm52285	predicted gene, 52285	within coordinates
Rr339285	regulatory region 339285	772 bp distal
Srrm2	serine/arginine repetitive matrix 2	within coordinates
Tssr142954	transcription start site region 142954	1929 bp downstream