rs33180487 SNP Detail

Summary

• ID
  rs33180487
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:98768547 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G CAGACAGAAC CATCACAGGT CTATCGTCCT GTCACTGAAC
  ATAATTTGCC AATGGATGTC AAAATATTCT TACAGTAATT GCATTGATCT AACAATTAAA
  K
  GGTTAGAAAA TTCAATGAAG ATACAAATGA AAAAGTATGA TAAACTCACA CATCCTAGCT
  CAGGGCTACA GAGCAACTAC ACCAGTCACC AGATTGCCTT G                    
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47765987	NES11267887	PERLEGEN	MM_PANEL2	f	SNP	T	G	T	G	T	G	G	T	G	T	G	G	G	G	T
ss136842133	ENSMUSSNP6903645	ENSEMBL	ENSEMBL_Sanger	f	SNP								T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33180487					SNP	T	G	T	G	T	G	G	T	G	T	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47765987	NES11267887	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:98768547 () rs orientation: forward

Symbol	Name	Function Class
Gm33700	predicted gene, 33700	1717 bp upstream