rs33180492 SNP Detail

Summary

• ID
  rs33180492
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:98769258 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    aaactattt acaggaatac tttttgatgt
  ttctggggat ccaatccatt gacctccagc attctaggaa aatactcaat cacccatgta
  ttttcccagc ccAATTACCT CCTTCAGGAT AATACAAATT TGAGGTCAGT TTTCTAATGG
  R
  AAAATAGTCA CATAAAAATA ACTTATTTgc cgggcactga tggcacacgc ctttaatccc
  agcacttggg aggcagaggc aggcagattt ctgagtttga gtccagcctg gtctacagag
  tgagttccag gagagtcagg gatacccaga                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47765992	NES11267860	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G		G	A	G		G
ss323133787	CHEV_9_98787624	CHEVERUD	SCREENING_POP	f	SNP									A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33180492					SNP	G	G	G	G	G	G	G	G	A	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47765992	NES11267860	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:98769258 () rs orientation: forward

Symbol	Name	Function Class
Gm33700	predicted gene, 33700	1006 bp upstream