rs33181149 SNP Detail

Summary

• ID
  rs33181149
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:98770108 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGGGATGA TAGCCTTCTT
  TTGAACCCGG GAAAGCCCAA CACTCATTCC CCCTGCCAAC ACCTCTCCCC CTCCCCTCGC
  CCAGCATACC TGGTCATTAG GCCCCGCCTT TCCGGGGCGG AGCTTCCTTA GAAGGCAGAC
  ACATATAAAG AACTCAAATC CTTTCCCAGT CAACACTTCT GATCAGCTAG TTCTTCTGAT
  Y
  ACACCTGCTC TCTCCCAGAG TGCCCAGAGT CGGCTGTAAA AGCCTCCACA CAACAGTTGT
  ACAACCTGCA AGAAGTACAG CTCTCCGGAC CAGCACTTGC ATCACACCTT TTTGGGCACG
  AACTACCAAC TGCCCACATC ACCCAAAATT GTGGATATGA AGCCCTGCAG CACCAGCACT
  GATCCTGAAC CCAATCCTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47765999	NES11267806	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	T	C	C	T	C	T	C	C	C	C	T
ss136842221	ENSMUSSNP3667509	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33181149					SNP	T	C	C	T	T	C	C	T	C	T	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47765999	NES11267806	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:98770108 () rs orientation: forward

Symbol	Name	Function Class
Gm33700	predicted gene, 33700	156 bp upstream