rs33183799 SNP Detail

Summary

• ID
  rs33183799
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:43922346 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACGTT CCTCTGCTAG GTTCTCAGGA
  Y
  CAAATAGGGA CATAGTCTTA TTGTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39504680	mCV25199428	ABI	CRAMUS_MOUSE	f	SNP		C					T		C
ss62746832	NES17342864	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		C	C	C	C		C	C	C	C		T
ss145670896	ENSMUSSNP1812865	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss325395828	CHEV_17_43748404	CHEVERUD	SCREENING_POP	f	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33183799					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62746832	NES17342864	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:43922346 () rs orientation: forward

Symbol	Name	Function Class
Pla2g7	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	within coordinates
Tssr144713	transcription start site region 144713	144 bp downstream
Tssr144714	transcription start site region 144714	59 bp downstream
Tssr144715	transcription start site region 144715	422 bp upstream
Tssr148139	transcription start site region 148139	572 bp downstream
Tssr148140	transcription start site region 148140	630 bp downstream
Tssr148141	transcription start site region 148141	678 bp downstream
Tssr148142	transcription start site region 148142	727 bp downstream