rs33183863 SNP Detail

Summary

• ID
  rs33183863
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:104992058 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTCTTCTT ATTAAAGCCG
  GGGGTAGTCC TGCACACCTT TAATGGTAGA ACTCAGGAGG CTGCTGCAGG AGGATCACAA
  TGAGTTACAG GTCAGTTCCA AGGCGCTTGA GGGCGTGTGT GTGTGGGACA CACACACACA
  CACACACACA CACACACAGA GGAGACTGAC AGGATCTTAT CTGCTTCCCT AGATAGCCTA
  R
  CACTCGTATG AATTATCTCA GGGCAGCAGC TGTGCTGTGT GAAGGCAGAT GTGCGGATGG
  ATGGGAGGGT CAGAGTAGAA CTAACTCACA CAACCATGGC TTCACAAAAA AGTCACAGGA
  AGGCTGGGCT CAGTCCACCT AGGCACCTAG AGAAGAAGGC ACCCACTCAC CCACAAGTGC
  TAACTTCACC CTGAGACAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss47267433	NES11392813	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs33183863					SNP	G	G	G	G	A	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47267433	NES11392813	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:104992058 () rs orientation: forward

Symbol	Name	Function Class
Gm47648	predicted gene, 47648	within coordinates
Gm47650	predicted gene, 47650	1843 bp downstream
Rr403484	regulatory region 403484	1960 bp upstream
Rr472053	regulatory region 472053	within coordinates
Rr472054	regulatory region 472054	317 bp distal
Rr472055	regulatory region 472055	81 bp distal
Rr472056	regulatory region 472056	1624 bp proximal
Rr472057	regulatory region 472057	1669 bp proximal