rs33184198 SNP Detail

Summary

• ID
  rs33184198
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:40832470 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTGCCATA TTTATCTCTA
  CATAATCAAA ATCCTGGCAC CCTAATTTAC AACTAGTATA GATGAAAGTT ATAAAGAGGG
  AATAGCAAAA TACAGGACAG TGTGCAGAAT TTTTTTTTCA GAAAATAAAA AGTGAATTTT
  TCTTCCCAGC TTTCTTGTGA AGACAGGGGA ATAGACCTGT GTAGAGCAAA CTAGCTTTTG
  Y
  AGATACACAG CAGAGACATC AGCCAGTCCT TTAATTATTA TTCTACAAAT TAAAGGCAAG
  GTGAACCAAT TACAGCAACC TCACATATCA ACTCTTCCCT TATTTTGTAA ATTACTTAGG
  CAGCCATAGT TGCTTTGGTA TTTCTTCTAC AAATGTATTT GTTACTTCTA TATCCCATGC
  ACTGCTTCAT TGAACCAGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39505324	mCV24452211	ABI	CRAMUS_MOUSE	f	SNP		T	C						C
ss62724041	NES17340792	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	C	T	T	T	C	C	T			C	C	C		T
ss145609515	ENSMUSSNP5256340	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C				C
ss325386007	CHEV_17_40658528	CHEVERUD	SCREENING_POP	f	SNP												T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33184198					SNP	T	T	C	T	C	T	T	T	C	C	T	T	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62724041	NES17340792	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:40832470 () rs orientation: forward

Symbol	Name	Function Class
Esp8	exocrine gland secreted peptide 8	within coordinates
Gm49847	predicted gene, 49847	within coordinates
Tssr144637	transcription start site region 144637	1551 bp downstream
Tssr144638	transcription start site region 144638	1535 bp downstream