rs33184825 SNP Detail

Summary

• ID
  rs33184825
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:104992265 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGAATTAT CTCAGGGCAG
  CAGCTGTGCT GTGTGAAGGC AGATGTGCGG ATGGATGGGA GGGTCAGAGT AGAACTAACT
  CACACAACCA TGGCTTCACA AAAAAGTCAC AGGAAGGCTG GGCTCAGTCC ACCTAGGCAC
  CTAGAGAAGA AGGCACCCAC TCACCCACAA GTGCTAACTT CACCCTGAGA CAATAAAGGT
  K
  CCCAACTTGC CAGTGAGGCC TTTGCAAAAA AAAAAAAAAA AGCTTACTTT GCATTTTTGA
  AAAGCAGAAT AGTTTTTTTG TGTGTTTAAA TTAAAATCCT TTGGAATTTT GTATCTACCA
  GCTACACTTT CAAAAATACA GCATTCAGAG TTAACAAGTG TTATCCTTCT GGGTAAACAG
  TCAGAAAAAG AGCCAGTTTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss47267436	NES11392814	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	G	T	G	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs33184825					SNP	T	T	T	T	T	G	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47267436	NES11392814	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:104992265 () rs orientation: forward

Symbol	Name	Function Class
Gm47648	predicted gene, 47648	within coordinates
Gm47650	predicted gene, 47650	1636 bp downstream
Rr403484	regulatory region 403484	1753 bp upstream
Rr472053	regulatory region 472053	within coordinates
Rr472054	regulatory region 472054	524 bp distal
Rr472055	regulatory region 472055	288 bp distal
Rr472056	regulatory region 472056	1417 bp proximal
Rr472057	regulatory region 472057	1462 bp proximal
Rr472058	regulatory region 472058	1893 bp proximal