rs33184829 SNP Detail

Summary

• ID
  rs33184829
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:104992478 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAGGCCTT TGCAAAAAAA
  AAAAAAAAAG CTTACTTTGC ATTTTTGAAA AGCAGAATAG TTTTTTTGTG TGTTTAAATT
  AAAATCCTTT GGAATTTTGT ATCTACCAGC TACACTTTCA AAAATACAGC ATTCAGAGTT
  AACAAGTGTT ATCCTTCTGG GTAAACAGTC AGAAAAAGAG CCAGTTTTAA AGACCCTTTT
  Y
  CTAATCGTCT TCTGAAAGGG AGAATGGGAA GTTCCACCTC CCCATCTCTA GCCCAGGCCG
  CCCTGGCGGA ACCCTGCGGT AACTGCTTTC TTGGCGACGG GAGTCCTGTG TGCAGTGGAC
  TCTCGTGATA GTGATGGTTT GAAAGCATGA AATTATCCAG CCTCAATGGT TTGGGAAATG
  CTGAGTGAAA TTCTGACTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss47267442	NES11392816	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs33184829					SNP	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47267442	NES11392816	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:104992478 () rs orientation: forward

Symbol	Name	Function Class
Gm47648	predicted gene, 47648	within coordinates
Gm47650	predicted gene, 47650	1423 bp downstream
Rr403484	regulatory region 403484	1540 bp upstream
Rr472053	regulatory region 472053	within coordinates
Rr472054	regulatory region 472054	737 bp distal
Rr472055	regulatory region 472055	501 bp distal
Rr472056	regulatory region 472056	1204 bp proximal
Rr472057	regulatory region 472057	1249 bp proximal
Rr472058	regulatory region 472058	1680 bp proximal