rs33184831 SNP Detail

Summary

• ID
  rs33184831
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:104992615 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTAACAAGT GTTATCCTTC
  TGGGTAAACA GTCAGAAAAA GAGCCAGTTT TAAAGACCCT TTTCCTAATC GTCTTCTGAA
  AGGGAGAATG GGAAGTTCCA CCTCCCCATC TCTAGCCCAG GCCGCCCTGG CGGAACCCTG
  CGGTAACTGC TTTCTTGGCG ACGGGAGTCC TGTGTGCAGT GGACTCTCGT GATAGTGATG
  K
  TTTGAAAGCA TGAAATTATC CAGCCTCAAT GGTTTGGGAA ATGCTGAGTG AAATTCTGAC
  TCAGCAGGAG TCAGAGGCCG TCACTCCTCA GAAGAGAACA CGTGTTCTTG TGGCTGAGAC
  TATCAGAGGG GCCCTTGGCC CCGTGATACT GACTGGCTCC TTGTTTTTGT GGTCTAGGCA
  TCTCCTCACA AGTCTTTGGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss47267445	NES11392817	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs33184831					SNP	G	G	G	G	G	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47267445	NES11392817	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:104992615 () rs orientation: forward

Symbol	Name	Function Class
Gm47648	predicted gene, 47648	within coordinates
Gm47650	predicted gene, 47650	1286 bp downstream
Rr403484	regulatory region 403484	1403 bp upstream
Rr472053	regulatory region 472053	within coordinates
Rr472054	regulatory region 472054	874 bp distal
Rr472055	regulatory region 472055	638 bp distal
Rr472056	regulatory region 472056	1067 bp proximal
Rr472057	regulatory region 472057	1112 bp proximal
Rr472058	regulatory region 472058	1543 bp proximal