rs33185539 SNP Detail

Summary

• ID
  rs33185539
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:127575135 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAATTACCT AATACATTCC
  AAGAATTTGC ATTTGATGTT AATTTGTTGC CTTATCTGTC CTTTCCTGTT AGCTAATGGT
  TCCTTTTCCT TGTTTTTGTT TTCTTTTTTT TTTCATGTAA CTAAGGTCCT CGGGATCAAG
  GATCTCGTCA TGATTCTGGT AAGCCCATGG TTTTTATATA GTATTCACTT GGATTTTCTT
  W
  GAAACAAAAA ATACTGCAAA AGTGGAGAGT GATGGGAGGG GCTGTATAAA TGCTAGAAAC
  CCTGGATCTG GAAGTTTAGA CTTCAGATTC TGGTATTTAT TATTTCTAGT ACGTCGTGGG
  TCTTGCTTGG GAGCTGTTCT TTTAAAGTTG ATGGTGTTTT AAAGTCCAAA AATTACTAAA
  CCAGACAATT TTTTACTTAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47266816	NES11556381	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	A	A	T		T	T	T	T		T
ss322451587	CHEV_7_135119477	CHEVERUD	SCREENING_POP	f	SNP											T					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33185539					SNP	T	T	T	T	T	T	T	A	A	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47266816	NES11556381	PERLEGEN	MM_PANEL	f	SNP	A/T
ss145883404	ENSMUSSNP3977997	ENSEMBL	ENSEMBL_Sanger	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:127575135 () rs orientation: forward

Symbol	Name	Function Class
Fus	fused in sarcoma	within coordinates
Tssr69330	transcription start site region 69330	1556 bp downstream