rs33185906 SNP Detail

Summary

• ID
  rs33185906
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:104993879 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGTTTCTGG GAACTCAGGA CTCATGGACG AGCAGTCAGT
  GCCCCTCACC ACTGAGCCAT CTCTCCAGCC CCATAGTGGA CTCTTAAGCA TGTTCTCTGC
  R
  TGTGTAGCTG GATATCTTTT GGAGATTTAC ATGTTTGGCA TGGATAGCAC ACAGATTGGT
  ATCTTCCCAA AGGCCAACCC GATAGGCCTC ACTTGCCTCC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	WSB/EiJ
ss47267451	NES11392690	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	WSB/EiJ
rs33185906					SNP	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47267451	NES11392690	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:104993879 () rs orientation: forward

Symbol	Name	Function Class
Gm47648	predicted gene, 47648	within coordinates
Gm47650	predicted gene, 47650	22 bp downstream
Rr403484	regulatory region 403484	139 bp upstream
Rr472053	regulatory region 472053	824 bp distal
Rr472055	regulatory region 472055	1902 bp distal
Rr472056	regulatory region 472056	within coordinates
Rr472057	regulatory region 472057	131 bp distal
Rr472058	regulatory region 472058	279 bp proximal
Rr472059	regulatory region 472059	1607 bp proximal