rs33185908 SNP Detail

Summary

• ID
  rs33185908
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:104994107 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACATGTTTG GCATGGATAG
  CACACAGATT GGTATCTTCC CAAAGGCCAA CCCGATAGGC CTCACTTGCC TCCTGCTCAG
  CACCAGTATC TGCACTCTGG AAGCGCAGAT CTGTTTTGAA ATCCTGAGCA ATTTCTTGCA
  CCAGACGCTG AAAGGGGAGC TTGCGAGTCA GCAGTTCAGT TCTGTTGACT TCTGATAGCG
  K
  CTGATTTCAG AGTGCCACAG TACTGGGCCT GTGACGACGA GGTTTCTTCA CCGTCCAGTA
  GAGGGCGCAC GCGTGTGAGC GGCTTTTGAA GCCAGTTGTT TCCTGGGTGT TTTACCACTA
  CCCCACCCCC TTCTCCTTGG TCTGGAGCTC CCCAAGCGAG AAGCAGTACA GTGCTGGCGT
  GAAAGCAATG GTGGCTCCCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47267454	NES11392691	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	T	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33185908					SNP	G	G	G	G	G	G	G	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47267454	NES11392691	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:104994107 () rs orientation: forward

Symbol	Name	Function Class
Gm47648	predicted gene, 47648	within coordinates
Gm47650	predicted gene, 47650	within coordinates
Rr403484	regulatory region 403484	within coordinates
Rr472053	regulatory region 472053	1052 bp distal
Rr472056	regulatory region 472056	within coordinates
Rr472057	regulatory region 472057	359 bp distal
Rr472058	regulatory region 472058	51 bp proximal
Rr472059	regulatory region 472059	1379 bp proximal