rs33185911 SNP Detail

Summary

• ID
  rs33185911
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:104994479 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAAGTTTCTC AATAAAACAA AGTCGGACAG TTGTACAACT
  TTAAGACATA TAAGGTTGGG TGTGGTGGTT CCTGCCTATA AGTAACTCTG GCATTTTGGA
  S
  GCAGGAACAG TGCTGCTGAG AGGACAGACA CACACCACCA CACCTTGCAC CCTAGGCTTC
  ATGTAAGGTT CAAACGGATT TGTGTACACA AAAGCTGTCT                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47267457	NES11392693	PERLEGEN	MM_PANEL2	f	SNP	G	C	G	C	C	G	C	C
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33185911					SNP	G	C	G	C	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47267457	NES11392693	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:104994479 () rs orientation: forward

Symbol	Name	Function Class
Gm47648	predicted gene, 47648	within coordinates
Gm47650	predicted gene, 47650	257 bp upstream
Rr403484	regulatory region 403484	160 bp downstream
Rr472053	regulatory region 472053	1424 bp distal
Rr472056	regulatory region 472056	within coordinates
Rr472057	regulatory region 472057	731 bp distal
Rr472058	regulatory region 472058	300 bp distal
Rr472059	regulatory region 472059	1007 bp proximal