rs33187164 SNP Detail

Summary

• ID
  rs33187164
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:84851657 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCTTTTCTG AAGAGAAATG GAGGAGTGGA TGTAGAGGGC
  ATTCTACTCT TTTGAAATGG AACTAACTCT CCCATTACTC ATCATTTAAG ATACAAACTA
  Y
  GTGACTCACA ATTCTATTAT ATAATCATAA GACAACCAGA CAGCACCTTG GTATGTATGT
  ATATCTCATC CCATAAAAAC ACTACACAAT CTTTCTTAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss39504987	mCV24484110	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss146139115	ENSMUSSNP1127692	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs33187164					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:84851657 () rs orientation: forward

Symbol	Name	Function Class
4930500A05Rik	RIKEN cDNA 4930500A05 gene	within coordinates
Gm64006	predicted gene, 64006	1851 bp downstream
Plekhh2	pleckstrin homology domain containing, family H (with MyTH4 domain) member 2	within coordinates
Tssr149687	transcription start site region 149687	968 bp upstream
Tssr149688	transcription start site region 149688	957 bp upstream