rs33187244 SNP Detail

Summary

• ID
  rs33187244
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:96357648 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGTGAGAG AGTGGGACCT
  CCTGGCCCGC CTTGGGTGGA GGCGAAGTTT GATGGATTCT GTTTTCTCTT TGCTATGAAG
  AAGATTGAAC TCAGAGGCGC GCACACGCTA GCTCCGCGCA CGGTCGCCTA GCAATATTCA
  TTTAAAGAAA AACCGAATCT TAAGAAGGCC AAGAGTATAG CGAAGGAAGC TGGGGACACT
  Y
  CAGCTTTCTC AAGACTTTAG TCAGAGAACC AGGTTCCCTC TATTTAAATG ACCGTTCGGA
  GTACATCTGC AGGGTCCAAA ATTAAAAATA AGAAGGAATG AATAATTAAT TACAGAGTTT
  TCAACAAAGC CATTCCCCAC CCCCGCCCCG AAGGTTGATA AACCTTTGAA CCCGAGCCAC
  GAAAGGCAGT CTCAGACAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45747927	mCV25015039	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
ss148870817	ENSMUSSNP1750786	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		T
ss321616897	CHEV_5_96638808	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33187244					SNP	C	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:96357648 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16074	CpG island 16074	174 bp proximal
Gm72185	predicted gene, 72185	within coordinates
Mrpl1	mitochondrial ribosomal protein L1	within coordinates
Rr367885	regulatory region 367885	162 bp upstream
Rr614892	regulatory region 614892	878 bp distal
Rr614893	regulatory region 614893	286 bp distal
Rr614894	regulatory region 614894	within coordinates
Rr614895	regulatory region 614895	253 bp proximal
Rr614896	regulatory region 614896	366 bp proximal
Tssr47395	transcription start site region 47395	301 bp downstream
Tssr47396	transcription start site region 47396	26 bp downstream
Tssr47397	transcription start site region 47397	339 bp upstream
Tssr51962	transcription start site region 51962	216 bp downstream