rs33187379 SNP Detail

Summary

• ID
  rs33187379
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:134296073 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATCC TCCTGCCTCA GCTTCCTAAG
  Y
  GCCAGGACTG CCGCATGCAC CACCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss45747775	mCV23024580	ABI	CRAMUS_MOUSE	f	SNP	C	T
ss144502847	ENSMUSSNP3115186	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss321695279	CHEV_5_134743089	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs33187379					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134296073 () rs orientation: forward

Symbol	Name	Function Class
Gm43481	predicted gene 43481	within coordinates
Gtf2i	general transcription factor II I	within coordinates
Tssr53620	transcription start site region 53620	1141 bp upstream
Tssr53621	transcription start site region 53621	601 bp upstream
Tssr53622	transcription start site region 53622	1998 bp downstream