rs33189387 SNP Detail

Summary

• ID
  rs33189387
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:151584188 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTAGACAAA TAAATTTTGC
  CATGTTGGTT GGTACCATGA CCCAAACCAT TGTCATTTTT TTTTTCTTGG TTGCCTGGCA
  TCAGCCTTGT ATGCTACACT GGTTTCACCC TACAACCAGA GAGATTCTGT TAAAACACAG
  GGAAGACCAT GTTCCTTAGG CCCAAGCCAC ACCTCAAAGG CGAAGTTCAC TCTAGGTCTG
  Y
  CACCCTCTCA CTCCACAGGC CCTGTGCCTT TCTGATATCA CCTCCAAGTG TCCTTTCATT
  CTCTGATCTC CTTGGCTCCA GTGACCTTGA CTTCTCTCAG CTCTCATGCC TAGGTTAACA
  TGCCACAGGT CTTGCCCTGA TGGAACTTTG TAGTGTTTCT TTTTAATAGA CAAAAAGCAA
  TCCAGTATGA AATCTGTCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45248304	mCV22908776	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss147957938	ENSMUSSNP3985184	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T
ss320561213	CHEV_2_151568004	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs33189387					SNP	C	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:151584188 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12424	CpG island 12424	802 bp distal
Psmf1	proteasome (prosome, macropain) inhibitor subunit 1	within coordinates
Rr567192	regulatory region 567192	1854 bp distal
Rr567193	regulatory region 567193	1020 bp distal
Rr567194	regulatory region 567194	468 bp distal
Rr567195	regulatory region 567195	within coordinates
Rr567196	regulatory region 567196	386 bp proximal
Tssr26747	transcription start site region 26747	1098 bp upstream
Tssr26748	transcription start site region 26748	1091 bp upstream
Tssr26749	transcription start site region 26749	1050 bp upstream
Tssr26750	transcription start site region 26750	1042 bp upstream
Tssr26751	transcription start site region 26751	959 bp upstream
Tssr26752	transcription start site region 26752	1874 bp downstream
Tssr26753	transcription start site region 26753	1938 bp downstream