rs33189904 SNP Detail

Summary

• ID
  rs33189904
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:98762467 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGGGGGTG ATGGAAGATG
  TAGGTAGTTG GAAGACGTCA GAGATACTGG AGTTGGTGTG TAATACATGA GAGAATAATT
  TTTTTAAGAA AGGAACATAT ACAGGGACGT TGCAGAGAGT ATAATGGTGA TAAAAAGATT
  GGTCCTTGGT GGAGAGAGTG AGGATATTAT ATAGAAATCC CATGTGAATT TACCTGTTTC
  R
  TCCTGACTTA TATTATGAAG CCATAATGCA GAAAAGGCCA CCAAAAAGAG AAAAAGAAAG
  AGGGCATGGG GAAAATGCTT ACCTCATCCA GAGGAGAGCC ACCGTGGGCT GAGAAGCTGG
  CGATAAAGAC ATGTTAGGGT TAATGACTCC TAAGATAAGA GCATGGGAGG ACAAGTGCTG
  GATCATTCTT CCCAGTATGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46783622	NES10737046	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33189904					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46783622	NES10737046	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:98762467 () rs orientation: forward

Symbol	Name	Function Class
Gm65690	predicted gene, 65690	within coordinates
Hsd3b1	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1	within coordinates
Rr1170	regulatory region 1170	within coordinates
Rr581744	regulatory region 581744	1070 bp distal
Rr581745	regulatory region 581745	within coordinates
Rr581746	regulatory region 581746	1494 bp proximal
Tssr34709	transcription start site region 34709	1861 bp upstream
Tssr34710	transcription start site region 34710	1804 bp upstream
Tssr34711	transcription start site region 34711	915 bp downstream