rs33190535 SNP Detail

Summary

• ID
  rs33190535
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:125565884 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCAG CTTGAGGTCC GGGCATCCTC
  K
  GTGTGGCTCG GGTCCGATCC CGGCC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45248486	mCV22613577	ABI	CRAMUS_MOUSE	f	SNP	G	G	T	G
ss147486043	ENSMUSSNP5129599	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		G
ss320497836	CHEV_2_125549700	CHEVERUD	SCREENING_POP	f	SNP					T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33190535					SNP	G	G	T	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:125565884 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12200	CpG island 12200	330 bp distal
D2Dcr70	DNA Segment, Chr 2, Derry C. Roopenian 70	1672 bp proximal
D2Mit398	DNA segment, Chr 2, Massachusetts Institute of Technology 398	1630 bp proximal
Rr367290	regulatory region 367290	665 bp upstream
Rr564270	regulatory region 564270	87 bp distal
Rr564271	regulatory region 564271	84 bp distal
Rr564272	regulatory region 564272	914 bp proximal
Shc4	SHC (Src homology 2 domain containing) family, member 4	mRNA-UTR
Tssr26008	transcription start site region 26008	427 bp upstream
Tssr26009	transcription start site region 26009	273 bp upstream
Tssr26010	transcription start site region 26010	241 bp upstream