rs33191765 SNP Detail

Summary

• ID
  rs33191765
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:109746836 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTTC TTAAAACTTG TCTGTATTTA
  Y
  TTATCCATTA GCATAACTTT AGAGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45248330	mCV23138393	ABI	CRAMUS_MOUSE	f	SNP		C	T	C
ss147206128	ENSMUSSNP3568740	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss320456103	CHEV_2_109756648	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33191765					SNP	C	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:109746836 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12039	CpG island 12039	977 bp proximal
Lgr4	leucine-rich repeat-containing G protein-coupled receptor 4	1156 bp upstream
Rr397176	regulatory region 397176	867 bp upstream
Rr562509	regulatory region 562509	666 bp proximal
Rr562510	regulatory region 562510	1167 bp proximal
Rr562511	regulatory region 562511	1272 bp proximal
Rr562512	regulatory region 562512	1311 bp proximal
Rr562513	regulatory region 562513	1699 bp proximal
Tssr19307	transcription start site region 19307	1080 bp upstream
Tssr19308	transcription start site region 19308	1105 bp upstream
Tssr19309	transcription start site region 19309	1148 bp upstream
Tssr19310	transcription start site region 19310	1188 bp upstream
Tssr19311	transcription start site region 19311	1232 bp upstream