rs33192320 SNP Detail

Summary

• ID
  rs33192320
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:154033425 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTCTCTGTC TCTCTCTCTC TCTCTCCCTC ACACACGCAC
  ACACACACAC ACACACACAC ACACAAGGGC TTGCCCAAAC CGCATCCACA CATGTCCAGA
  Y
  ACCTGTGTGG GGCTGCACAC ACAAAAACAG CAGCCATCAC ACCTAAACAC CCAAACTTGG
  TTCTCACTGT CATCGGCACA CTGTGGTCCT AATGTTGAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45248433	mCV23868187	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss320569696	CHEV_2_154017241	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs33192320					SNP	T	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:154033425 () rs orientation: forward

Symbol	Name	Function Class
Bpifb1	BPI fold containing family B, member 1	Intron
Rr567774	regulatory region 567774	677 bp distal
Rr567775	regulatory region 567775	471 bp distal
Rr567776	regulatory region 567776	429 bp distal
Rr567777	regulatory region 567777	685 bp proximal
Tssr20971	transcription start site region 20971	746 bp downstream
Tssr20972	transcription start site region 20972	737 bp downstream
Tssr20973	transcription start site region 20973	723 bp downstream
Tssr20974	transcription start site region 20974	673 bp downstream
Tssr20975	transcription start site region 20975	648 bp downstream
Tssr20976	transcription start site region 20976	232 bp downstream
Tssr20977	transcription start site region 20977	1850 bp upstream