rs33192408 SNP Detail

Summary

• ID
  rs33192408
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:100182661 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCTCCAGT GGGCAGGAGG
  AAGAGCGAGG CGGGGTCTCT CCCTGCTGCT TTACTTAGGA ATCTCCCACA AAACAGATGG
  ATCTGCCCTT CCTCCAGTTG TGGGGATACT GAGCCTGGTG TACAGTGTAC GAGACAACAA
  GACAATCCAG AGGCTGTAAA GATTTCTGAG AGGACTGAAT GGGAGTGGAG CTGGTTTTGT
  Y
  AGGAGAAAGG AAAGCTGGTA AGCAAGACTG TCATATTCTG GAACGACCCT GAGGGGAACT
  CTGCCTCTGT TTCTGTTTCT CTTCCGTAGT GGACCTAGAC AGAGCTCTCT GGTAACAAGT
  CAGGACCAAG AACCGCAAGT ACAACTCATG CTTTTTCTAG GTCTCTCTTT GTTCATGATC
  TGACCAGGAA AACAATAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss47767878	NES11275992	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C		T	C	T		C
ss323141711	CHEV_9_100201027	CHEVERUD	SCREENING_POP	f	SNP											T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs33192408					SNP	C	C	C	C	C	C	C	C	C	C	T	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47767878	NES11275992	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:100182661 () rs orientation: forward

Symbol	Name	Function Class
Gm28167	predicted gene 28167	within coordinates
Rr685479	regulatory region 685479	1009 bp proximal
Rr685480	regulatory region 685480	1135 bp proximal