rs33192412 SNP Detail

Summary

• ID
  rs33192412
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:100183324 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACAATGCT GGCTTCTTAG
  GACTGGGTGA GCATGACTGG AGGTCGCTCA TGAAATACTC CCTGGGTGTT AAATACTTCA
  GAAACCTTTC TCCTTTGTTC CTCAAACCTT GACCAGGACC CGGCAATCAT TCATTTACCT
  TTCTGGAGAC TGGGATGAGA GATGAAGTCA CATAACAGGG AAAGAAGGGA CAGTAAACAA
  R
  CGTGGCTTGT CAGGTTTATG CCAGAGGTAA GTTCTTGAAG GTCTCGTGTC ACTCAAGGTA
  GAATCCTCCT AGGTGCATAT GTAAAATGGA GGATGTGTTC TAAGGGCACG TAAATTGGCA
  AGCATTGTAC AATGATATGT TCTAATGCTG CCTTTTATTT TCTTAGCATT CGCTCTAATA
  TTTTGCAGAG GGCTTGTGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47767883	NES11275997	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G		A	A	A	A		A
ss323141715	CHEV_9_100201690	CHEVERUD	SCREENING_POP	f	SNP								A					A
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33192412					SNP	G	G	G	G	A	G	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47767883	NES11275997	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:100183324 () rs orientation: forward

Symbol	Name	Function Class
Gm28167	predicted gene 28167	within coordinates
Rr685479	regulatory region 685479	346 bp proximal
Rr685480	regulatory region 685480	472 bp proximal