rs33192987 SNP Detail

Summary

• ID
  rs33192987
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:26755550 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAAA GAGGTCATCA GAATTACCAG
  W
  GCAGTGAGAC AGCCAATTCA CAAAA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39505877	mCV22900303	ABI	CRAMUS_MOUSE	f	SNP	A	A	T	A
ss145405406	ENSMUSSNP5910279	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
ss325342277	CHEV_17_26673521	CHEVERUD	SCREENING_POP	f	SNP					T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33192987					SNP	A	A	T	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26755550 () rs orientation: forward

Symbol	Name	Function Class
Gm34606	predicted gene, 34606	212 bp downstream
Gm50275	predicted gene, 50275	within coordinates
Gm64855	predicted gene, 64855	817 bp downstream
Rr405114	regulatory region 405114	1474 bp upstream
Tssr5048	transcription start site region 5048	1219 bp downstream
Tssr5049	transcription start site region 5049	1168 bp upstream
Tssr5050	transcription start site region 5050	740 bp downstream
Tssr143246	transcription start site region 143246	1754 bp upstream