rs33194785 SNP Detail

Summary

• ID
  rs33194785
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24850206 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTTATTGCT GATTAGCACT CTAATACGTT TTCACTTTTG
  ATGGACTTTT TTGAGTACTT CCACCCTAGA ACTATTTTAA GAGATTCACT ATGATGATCT
  Y
  TATTTGTAGA ATTGCGTCCT CATGTCTCTT GTATAAATGC TTGGGTGAGG ATCATATGAT
  AGGTCATGTT ATTGTTTGAC CCTAAAATGT TCTCAGAAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45748954	mCV23207945	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss321496125	CHEV_5_24151026	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs33194785					SNP	C	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24850206 () rs orientation: forward

Symbol	Name	Function Class
Tssr45438	transcription start site region 45438	239 bp upstream
Tssr45439	transcription start site region 45439	257 bp upstream
Tssr45440	transcription start site region 45440	274 bp upstream
Tssr45441	transcription start site region 45441	286 bp upstream
Tssr45442	transcription start site region 45442	293 bp upstream