rs33195142 SNP Detail

Summary

• ID
  rs33195142
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:98764086 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGGATTCAG AAGAGGGAGA CACAAAGATG GACATTCAGC
  CCTGCCCCTG ATAGGTCTTG ACACTTGGGT CTGTGCTGAG AACAAATGAA GAGTTAGCTG
  W
  ATTACAGACA GGGAAACAGA TCCTCTGTGA GAGAACTATC TTTCAGCATA CAGCAGGTAC
  CAGAAGCATC CACTGATGCT GCATATGTCA CCCCTTAAGA                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46783697	NES10737011	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	T	A	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33195142					SNP	A	A	A	A	A	A	T	A	A	A	T	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46783697	NES10737011	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:98764086 () rs orientation: forward

Symbol	Name	Function Class
Gm65690	predicted gene, 65690	within coordinates
Hsd3b1	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1	within coordinates
Rr1170	regulatory region 1170	1140 bp distal
Rr581745	regulatory region 581745	905 bp distal
Rr581746	regulatory region 581746	within coordinates
Tssr979	transcription start site region 979	1144 bp downstream
Tssr980	transcription start site region 980	1531 bp downstream
Tssr981	transcription start site region 981	1557 bp downstream
Tssr34711	transcription start site region 34711	689 bp upstream
Tssr34712	transcription start site region 34712	1150 bp downstream
Tssr34713	transcription start site region 34713	1197 bp downstream
Tssr34714	transcription start site region 34714	1236 bp downstream
Tssr34715	transcription start site region 34715	1330 bp downstream
Tssr34716	transcription start site region 34716	1353 bp downstream
Tssr34717	transcription start site region 34717	1413 bp downstream
Tssr34718	transcription start site region 34718	1473 bp downstream
Tssr34719	transcription start site region 34719	1519 bp downstream
Tssr34720	transcription start site region 34720	1540 bp downstream