rs33195599 SNP Detail

Summary

• ID
  rs33195599
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:41656310 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCACAATA ACCACTGTAT
  TTATAGTTAT CATGTTTATT TATTATTATC AGTAGAAATG GTATCCCAGT GGGGATTTAT
  GTGATCAGCA GAGATTGTAA GTCTCCTGTA GGAAACCCCA TCCACACTGT GGGTGGAATT
  ATCTTTAAAA TGAACCAAAG GCAGTGCCAC ACAGTTGAGG AGCATGCTAC AAAATTTCAC
  Y
  GAGGAGTGTC TTTTAGAGTA GTCCTTTAAA AGGAAGGATA AAGGAAAATA TTGCTAGTTA
  GCAGAGATTA CACATACTTG AACACAGTAT TTCCCAGGAG CAGAATCAAC ATACCCTTTT
  GCTTAAGTAA AATATTCAAA CTTATCATTA TCTGCTATTC TAACCAAGGT ATGGAAATAA
  GTAACATCAA CTTTGGCATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47268359	NES11089415	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33195599					SNP	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47268359	NES11089415	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:41656310 () rs orientation: forward

Symbol	Name	Function Class
Gm70758	predicted gene, 70758	440 bp downstream