rs33195975 SNP Detail

Summary

• ID
  rs33195975
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:98764684 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTCCAGAA AAGTCTTCTG
  TCATTTCCTC TGTGAAGATG AAGGTCAGAG GGGAATGACG TTGGAGAATG GAGGTGAAGC
  ATCTGTGGCC CTCCCCTGAC TCAGCTCCCT AAAATGCTCA GTATATGTTG TCTGACTCAG
  TTTCTCACTC TTTGCCCCTC TCTGTCTCTC TTTCACTCAC TGATTTCACT CTTCAACCTT
  Y
  AACTCCACGG GGGAGACTGT TGAATGACTT CCCTCTGCCA AACCACACTA GAAAAGGAAC
  AAGCAACCAT ACCAAGTAGA AAAGACAGAG ACCCTCTGCA GAGGCTGCAA TCCAGCATCC
  TTGCTAATGC TGCAGAGCCC TAAACAAGTA TATACTGATA TTACTTTACA GGAAGAACAC
  AACTGTGAGA TTGCCAGATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46783700	NES10737012	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C		C	C	T	C		C
ss320845389	CHEV_3_98661291	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33195975					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46783700	NES10737012	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:98764684 () rs orientation: forward

Symbol	Name	Function Class
Gm65690	predicted gene, 65690	within coordinates
Hsd3b1	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1	within coordinates
Rr1170	regulatory region 1170	1738 bp distal
Rr581745	regulatory region 581745	1503 bp distal
Rr581746	regulatory region 581746	within coordinates
Tssr979	transcription start site region 979	546 bp downstream
Tssr980	transcription start site region 980	933 bp downstream
Tssr981	transcription start site region 981	959 bp downstream
Tssr34711	transcription start site region 34711	1287 bp upstream
Tssr34712	transcription start site region 34712	552 bp downstream
Tssr34713	transcription start site region 34713	599 bp downstream
Tssr34714	transcription start site region 34714	638 bp downstream
Tssr34715	transcription start site region 34715	732 bp downstream
Tssr34716	transcription start site region 34716	755 bp downstream
Tssr34717	transcription start site region 34717	815 bp downstream
Tssr34718	transcription start site region 34718	875 bp downstream
Tssr34719	transcription start site region 34719	921 bp downstream
Tssr34720	transcription start site region 34720	942 bp downstream