rs33195977 SNP Detail

Summary

• ID
  rs33195977
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:98764706 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATATGTTGTC TGACTCAGTT TCTCACTCTT TGCCCCTCTC
  TGTCTCTCTT TCACTCACTG ATTTCACTCT TCAACCTTCA ACTCCACGGG GGAGACTGTT
  S
  AATGACTTCC CTCTGCCAAA CCACACTAGA AAAGGAACAA GCAACCATAC CAAGTAGAAA
  AGACAGAGAC CCTCTGCAGA GGCTGCAATC CAGCATCCTT                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46783703	NES10737013	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33195977					SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46783703	NES10737013	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:98764706 () rs orientation: forward

Symbol	Name	Function Class
Gm65690	predicted gene, 65690	within coordinates
Hsd3b1	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1	within coordinates
Rr1170	regulatory region 1170	1760 bp distal
Rr581745	regulatory region 581745	1525 bp distal
Rr581746	regulatory region 581746	within coordinates
Tssr979	transcription start site region 979	524 bp downstream
Tssr980	transcription start site region 980	911 bp downstream
Tssr981	transcription start site region 981	937 bp downstream
Tssr34711	transcription start site region 34711	1309 bp upstream
Tssr34712	transcription start site region 34712	530 bp downstream
Tssr34713	transcription start site region 34713	577 bp downstream
Tssr34714	transcription start site region 34714	616 bp downstream
Tssr34715	transcription start site region 34715	710 bp downstream
Tssr34716	transcription start site region 34716	733 bp downstream
Tssr34717	transcription start site region 34717	793 bp downstream
Tssr34718	transcription start site region 34718	853 bp downstream
Tssr34719	transcription start site region 34719	899 bp downstream
Tssr34720	transcription start site region 34720	920 bp downstream