rs33195988 SNP Detail

Summary

• ID
  rs33195988
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25103362 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TCCTCCCTCA GACCTTGAAA GATGCCCACC CATCTTCTAA GACTCACAGC GCAGTGTGGG
  CAGGTGAAGC CGCTCATGTT CTCTATGACC CCTATCACCT GCAGCCCAGT CTTCTTACAG
  AAGGTCAGCT CCCGCCTCAC ATCCCCAATA GACACCGCCT GTGGATCAGA GGAGGGGCCA
  GTCAGCCACA GATGAGGCAA GAATCAAGCA GAGAACATGG CCCACTACAG TCCATTCCAA
  GCTCAACCAG GGTGGACAGA CAGATACACA GACACCCATG CCCAGGTAGG GTTGGAAGAG
  W
  TGCCAGTAGT ACCTGTGGTG TGGTGACTAC AAGAGCCCCA AGGGGCCTGT AGGGGCGCAG
  GGCTTCCATA GTGGCCATGT GCTCATCAGA GGTCCCTGGA GGTGTGTCCA CAACCAGATA
  ATCCAGCTGC CCCCAGGCCA CGTCAGACAC AAACTGCTTT ATCAGTGCTG CAAAGACCCC
  AAAGCCCAGC AGTAATCCCT GAGAAAGGGT TAGGAAAGGG AAGGCCCATC TTGTCCAGCC
  CAGGATCTCC ATCAGTTGCT TCTGGGCAGC TCCCAGGGAA CCCTGGGGAC ATGTGCCACA
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39506089	mCV25251484	ABI	CRAMUS_MOUSE	f	SNP		A	T	A
ss145368900	ENSMUSSNP6138996	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33195988					SNP	T	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25103362 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8747	CpG island 8747	1417 bp proximal
Nubp2	nucleotide binding protein 2	within coordinates
Rr339336	regulatory region 339336	638 bp proximal
Rr405096	regulatory region 405096	1879 bp upstream
Tssr143106	transcription start site region 143106	1574 bp upstream
Tssr143107	transcription start site region 143107	1587 bp upstream
Tssr143108	transcription start site region 143108	1614 bp upstream
Tssr143109	transcription start site region 143109	1632 bp upstream
Tssr146788	transcription start site region 146788	1471 bp downstream
Tssr146789	transcription start site region 146789	1484 bp downstream
Tssr146790	transcription start site region 146790	1512 bp downstream
Tssr146791	transcription start site region 146791	1548 bp downstream
Tssr146792	transcription start site region 146792	1916 bp downstream
Tssr146793	transcription start site region 146793	1995 bp downstream