rs33196788 SNP Detail

Summary

• ID
  rs33196788
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:98761788 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGGCTCTT ACAATCCTTC
  CTCCCTCTCT TCAGCAGGGT TATCTGAACT CTGCCTAATA TTGCTCTGTG GGTCCCTGCA
  TATTTTTCCA TCAGTTCCTG GACAAAGCCC TCTAGTGACA ATTGTTTTAG ACATCAGTCT
  ATGAGTATAA TAGAATATCA TTACACAGAA TTTCATATAC ACACACACAT GCACACACAT
  M
  TAAATGCACC AGTGCTGGTT GGTTCTATGC CTCTTGTGGT TGGTTCTCTC CTAGGTCTCT
  GGGCCATTTG GTATCTTGTT TCTTTTCCTC AAGGCAGTTT TAGGCTGGAC TTCCCCTGGT
  GACAAGGGGC CTCAAGCTGG AAACTCACAG AATCAATAAA CCTTGACTCA TAGGAGCTTA
  CTGAGAATGA ACCAACAATC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss46783613	NES10737085	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	C	A	C	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs33196788					SNP	A	A	A	A	A	A	A	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46783613	NES10737085	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:98761788 () rs orientation: forward

Symbol	Name	Function Class
Gm65690	predicted gene, 65690	within coordinates
Hsd3b1	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1	within coordinates
Rr1170	regulatory region 1170	579 bp proximal
Rr581744	regulatory region 581744	391 bp distal
Rr581745	regulatory region 581745	240 bp proximal
Tssr30852	transcription start site region 30852	1906 bp downstream
Tssr30853	transcription start site region 30853	1741 bp downstream
Tssr34707	transcription start site region 34707	1510 bp upstream
Tssr34708	transcription start site region 34708	1329 bp upstream
Tssr34709	transcription start site region 34709	1182 bp upstream
Tssr34710	transcription start site region 34710	1125 bp upstream
Tssr34711	transcription start site region 34711	1594 bp downstream