rs33196790 SNP Detail

Summary

• ID
  rs33196790
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:98761790 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TACAC ACACACATGC ACACACATAT
  M
  AATGCACCAG TGCTGGTTGG TTCTA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss46783616	NES10737086	PERLEGEN	MM_PANEL2	f	SNP	C		A	A	A	C	A	A	C	C	A		A	A	C		A
ss135527783	ENSMUSSNP4363472	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A
ss320845380	CHEV_3_98658397	CHEVERUD	SCREENING_POP	f	SNP												A				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs33196790					SNP	C	C	A	A	A	C	A	A	C	C	A	A	A	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46783616	NES10737086	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:98761790 () rs orientation: forward

Symbol	Name	Function Class
Gm65690	predicted gene, 65690	within coordinates
Hsd3b1	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1	within coordinates
Rr1170	regulatory region 1170	577 bp proximal
Rr581744	regulatory region 581744	393 bp distal
Rr581745	regulatory region 581745	238 bp proximal
Tssr30852	transcription start site region 30852	1908 bp downstream
Tssr30853	transcription start site region 30853	1743 bp downstream
Tssr34707	transcription start site region 34707	1512 bp upstream
Tssr34708	transcription start site region 34708	1331 bp upstream
Tssr34709	transcription start site region 34709	1184 bp upstream
Tssr34710	transcription start site region 34710	1127 bp upstream
Tssr34711	transcription start site region 34711	1592 bp downstream