rs33196894 SNP Detail

Summary

• ID
  rs33196894
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:98764949 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCATACCA AGTAGAAAAG
  ACAGAGACCC TCTGCAGAGG CTGCAATCCA GCATCCTTGC TAATGCTGCA GAGCCCTAAA
  CAAGTATATA CTGATATTAC TTTACAGGAA GAACACAACT GTGAGATTGC CAGATGGGAA
  GAAAGACAGT GTCTGGAACT CCAGCAGCTG GGTTTGTGGC CACCATCTCT AGATCAGATA
  Y
  AAGACAGACT ATAGTCCCAC AACTGTGGTG TATTTTACGC TGTGTGATCA TGAATCTTCC
  AGATGTGTTC AAGCATGGAG AAGCCTTAAG TTCCAAGAGG GCTTCCATAT TTGCTAGAAA
  AGATTCCCCC CAATGCTCAG TCAGTACTCC CAACAGTCAC ACAAATAGAG ACTCTGACCC
  ACTTACTGGA GAATTCCTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46783712	NES10737016	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33196894					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46783712	NES10737016	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:98764949 () rs orientation: forward

Symbol	Name	Function Class
Gm65690	predicted gene, 65690	within coordinates
Hsd3b1	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1	within coordinates
Rr581745	regulatory region 581745	1768 bp distal
Rr581746	regulatory region 581746	within coordinates
Tssr979	transcription start site region 979	281 bp downstream
Tssr980	transcription start site region 980	668 bp downstream
Tssr981	transcription start site region 981	694 bp downstream
Tssr34711	transcription start site region 34711	1552 bp upstream
Tssr34712	transcription start site region 34712	287 bp downstream
Tssr34713	transcription start site region 34713	334 bp downstream
Tssr34714	transcription start site region 34714	373 bp downstream
Tssr34715	transcription start site region 34715	467 bp downstream
Tssr34716	transcription start site region 34716	490 bp downstream
Tssr34717	transcription start site region 34717	550 bp downstream
Tssr34718	transcription start site region 34718	610 bp downstream
Tssr34719	transcription start site region 34719	656 bp downstream
Tssr34720	transcription start site region 34720	677 bp downstream