rs33197113 SNP Detail

Summary

• ID
  rs33197113
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:155867960 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTAC CCACATTGTA AAATGAGCTC
  K
  TATTCTGCCA CTTGTCTCAA AAGAA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	MOLF/EiJ	NZW/LacJ
ss46783959	NES10996770	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	MOLF/EiJ	NZW/LacJ
rs33197113					SNP	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46783959	NES10996770	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155867960 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15485	CpG island 15485	512 bp proximal
Rr606569	regulatory region 606569	642 bp proximal
Rr606570	regulatory region 606570	1142 bp proximal
Tmem278	transmembrane protein 278	within coordinates
Tssr44971	transcription start site region 44971	519 bp downstream
Tssr44972	transcription start site region 44972	1395 bp downstream
Tssr44973	transcription start site region 44973	1433 bp downstream
Tssr44974	transcription start site region 44974	1505 bp downstream
Tssr44975	transcription start site region 44975	1519 bp downstream
Tssr44976	transcription start site region 44976	1546 bp downstream
Tssr44977	transcription start site region 44977	1556 bp downstream